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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30217638_30218668_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30217638 - 30218668
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAGTTCAGAAAT
Flanking Amino Acid:
EISISASQERDSNWNIECWI
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.6
0.76
0.8
84.5
30.4
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
48.5
-0
1.8
68.38
41.7

Associated Gene:

Gene:
LEPR
Ensembl Gene ID:
ENSAPLG00000015902
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016634
30210571 - 30243037
32467