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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30223483_30224807_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30223483 - 30224807
Intron Length:
1325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AATTTGTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTCAATTAATT
Flanking Amino Acid:
PLMAVKPIDIIKPEPPLNLH
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.2
0.61
0.9
70.4
40.3
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
57.3
0.31
1.8
77.07
38.7

Associated Gene:

Gene:
LEPR
Ensembl Gene ID:
ENSAPLG00000015902
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016634
30210571 - 30243037
32467