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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30227600_30227773_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30227600 - 30227773
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTTATTAATA
Flanking Amino Acid:
HHRYAELYVVDVNINIKCET
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.9
0.54
1
75.4
38.6
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
68
0.56
1.5
75.76
35.9

Associated Gene:

Gene:
LEPR
Ensembl Gene ID:
ENSAPLG00000015902
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016634
30210571 - 30243037
32467