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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30227892_30230237_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30227892 - 30230237
Intron Length:
2346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATTAACTTAATG
Flanking Amino Acid:
VGSSLQLRYYRSKIYCPNFP
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
84.9
26.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
73.6
0.53
1
77.8
28.3
Minor 5ss
40
-1.1
2.7
50.4
46.1
Minor BPS
63.9
0.3
1.6
67.91
39.5

Associated Gene:

Gene:
LEPR
Ensembl Gene ID:
ENSAPLG00000015902
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016634
30210571 - 30243037
32467