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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30230438_30232448_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30230438 - 30232448
Intron Length:
2011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTCAA
5'SS Class:
major
3'SS Sequence:
TTCAATTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTCTTTCAATT
Flanking Amino Acid:
SPTCVVPADVVKPLPPSDIK
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
65
42.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
77.3
0.62
0.9
69.5
41.2
Minor 5ss
31.7
-2.1
3.1
31.8
42.6
Minor BPS
63.9
0.51
1.5
81.05
34.8

Associated Gene:

Gene:
LEPR
Ensembl Gene ID:
ENSAPLG00000015902
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016634
30210571 - 30243037
32467