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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30232999_30233086_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30232999 - 30233086
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCGTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TCTTTCAAAACT
Flanking Amino Acid:
SAYAVVRDIKAPLQGPEFWR
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
79.8
0.67
0.9
73.2
37.2
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
57.9
0.33
2
80.09
42.1

Associated Gene:

Gene:
LEPR
Ensembl Gene ID:
ENSAPLG00000015902
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016634
30210571 - 30243037
32467