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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30233170_30233823_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30233170 - 30233823
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AACTAATTAATG
Flanking Amino Acid:
RQKNVTLLWKPLMKNHSLCS
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.1
0.65
1
73.4
41.3
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
48.9
-0.2
1.8
53.37
41.3

Associated Gene:

Gene:
LEPR
Ensembl Gene ID:
ENSAPLG00000015902
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016634
30210571 - 30243037
32467