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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30234041_30235217_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30234041 - 30235217
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GTTCACATAATT
Flanking Amino Acid:
NLTLSQQLSTVNAVQSLIAY
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
79.9
0.67
1
80.3
37.3
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
55.8
0.26
1.8
76.84
39

Associated Gene:

Gene:
LEPR
Ensembl Gene ID:
ENSAPLG00000015902
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016634
30210571 - 30243037
32467