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Intron Name: Anas_platyrhynchos_platyrhynchos_8_3026125_3027004_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3026125 - 3027004

Intron Length:

880

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTTTCCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TTATTATTAATG

Flanking Amino Acid:

VEKTTEDIIKSVKTEKAEAE

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.1

1.06

0.7

83.7

29.5

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

82.3

0.73

0.7

76.6

Minor 5ss

-1.8

3.1

44.6

43.4

Minor BPS

64.2

0.31

1.6

69.07

38.4

Associated Gene:

Gene:

PALMD

Ensembl Gene ID:

ENSAPLG00000013197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029142

2984428 - 3029089

44662

ENSAPLT00000013770

3009431 - 3033191

23761