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Intron Name: Anas_platyrhynchos_platyrhynchos_8_3027039_3027126_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3027039 - 3027126

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTTTT

5'SS Class:

strong_major

3'SS Sequence:

ATTCTTTATTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TATTCTTTATTC

Flanking Amino Acid:

VKTEKAEAEEEAADYIYASI

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

88.1

28.7

Major BPS

83.9

0.84

73.9

41.3

Major PPT

83.2

0.75

0.9

81.8

34.3

Minor 5ss

45.1

-0.5

3.1

44.3

Minor BPS

0.55

1.5

75.2

35.6

Associated Gene:

Gene:

PALMD

Ensembl Gene ID:

ENSAPLG00000013197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013770

3009431 - 3033191

23761

ENSAPLT00000029142

2984428 - 3029089

44662