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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30279422_30281861_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30279422 - 30281861
Intron Length:
2440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GTTTGAAGAATT
Flanking Amino Acid:
RSVMTVTADENALDYLECGL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
89.1
0.88
0.7
84.2
30.7
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
43.5
-0.4
2.2
68.16
42.3

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020393
30279313 - 30434599
155287