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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30282098_30374989_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30282098 - 30374989
Intron Length:
92892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
GCACGTGTGACA
Flanking Amino Acid:
PSIAITTYQDCFDVENGPSP
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
76.7
34.9
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
86
0.81
0.8
80.4
31.6
Minor 5ss
40.6
-1
3.2
54.1
45.6
Minor BPS
39.2
-0.8
2.2
44.58
38.2

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020393
30279313 - 30434599
155287