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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30385919_30409624_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30385919 - 30409624
Intron Length:
23706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTGTTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
TCAGCCCGACTA
Flanking Amino Acid:
GHPHALEGAAEEPYQKLAME
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
65.3
46
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
73.9
0.54
0.9
68
37.5
Minor 5ss
39.7
-1.2
2.8
50
46.3
Minor BPS
41.1
-0.6
2
49.39
41.7

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025709
30385642 - 30434599
48958