Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30386881_30409624_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

30386881 - 30409624

Intron Length:

22744

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTAAGTCGC

5'SS Class:

major

3'SS Sequence:

TGCCTGTTCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTACAT

U12 Branch Point Sequence:

TCAGCCCGACTA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.7

0.39

1.4

47.1

Major BPS

61.4

0.28

1.1

36.5

Major PPT

73.9

0.54

0.9

37.5

Minor 5ss

35.5

-1.6

2.9

40.2

38.9

Minor BPS

41.1

-0.6

49.39

41.7

Associated Gene:

Gene:

PDE4B

Ensembl Gene ID:

ENSAPLG00000007240

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007532

30386693 - 30434585

47893