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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3039803_3039895_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3039803 - 3039895
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
ACTGACACACTT
Flanking Amino Acid:
LQSLTSAEAEGHLFKQIVLT
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
90.4
0.91
0.6
85.3
22
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
37.5
-0.8
2
52.2
42.7

Associated Gene:

Gene:
FRRS1
Ensembl Gene ID:
ENSAPLG00000013379
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020540
3039710 - 3052501
12792
ENSAPLT00000018049
3039710 - 3057568
17859
ENSAPLT00000013940
3039710 - 3056222
16513