About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30399435_30409624_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30399435 - 30409624
Intron Length:
10190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTGTTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
TCAGCCCGACTA
Flanking Amino Acid:
VQASLTSLPMRGALPEAGHG
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
87.1
29.6
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
73.9
0.54
0.9
68
37.5
Minor 5ss
35.2
-1.7
3.1
50.7
45.8
Minor BPS
41.1
-0.6
2
49.39
41.7

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024723
30399217 - 30434599
35383