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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30409738_30424008_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30409738 - 30424008
Intron Length:
14271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AAAATGCCATCT
Flanking Amino Acid:
RSVSEMASNKFKRMLNRELT
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
72.4
0.5
0.9
65.5
36.1
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
32.4
-1.2
2.2
46.18
38.6

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020393
30279313 - 30434599
155287
ENSAPLT00000007532
30386693 - 30434585
47893
ENSAPLT00000046712
30297864 - 30434599
136736
ENSAPLT00000025709
30385642 - 30434599
48958