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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3041902_3042354_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3041902 - 3042354
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTATGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGATATTCAAAT
Flanking Amino Acid:
PFIYRGGWSKQAGFHPYLGC
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
71.5
0.48
1
70
40.5
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
49.3
0.02
1.8
68.72
41.3

Associated Gene:

Gene:
FRRS1
Ensembl Gene ID:
ENSAPLG00000013379
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020540
3039710 - 3052501
12792
ENSAPLT00000018049
3039710 - 3057568
17859
ENSAPLT00000013940
3039710 - 3056222
16513