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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30424103_30427410_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30424103 - 30427410
Intron Length:
3308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCGT
5'SS Class:
major
3'SS Sequence:
TTATTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCACCTTTATT
Flanking Amino Acid:
VSEYISNTFLDKQNDVEIPS
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
85.1
0.79
0.9
80
37.3
Minor 5ss
32
-2.1
3.4
39.3
46
Minor BPS
65.6
0.57
1.7
80.75
41.1

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046712
30297864 - 30434599
136736
ENSAPLT00000025709
30385642 - 30434599
48958
ENSAPLT00000020393
30279313 - 30434599
155287
ENSAPLT00000007532
30386693 - 30434585
47893