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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30428280_30428412_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30428280 - 30428412
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCGTGGT
5'SS Class:
major
3'SS Sequence:
ATTTATTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTATTTGATA
Flanking Amino Acid:
LTCIMYAIFQERDLLKTFKI
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
68.4
42.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.5
0.66
0.9
73.7
40.1
Minor 5ss
29.7
-2.3
3.2
41.9
44.6
Minor BPS
62.2
0.38
1.5
70.55
36

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007532
30386693 - 30434585
47893
ENSAPLT00000046712
30297864 - 30434599
136736
ENSAPLT00000025709
30385642 - 30434599
48958
ENSAPLT00000024723
30399217 - 30434599
35383
ENSAPLT00000020393
30279313 - 30434599
155287