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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30428578_30429006_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30428578 - 30429006
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTTTTCTGACAA
Flanking Amino Acid:
HVLLSTPALDAVFTDLEILA
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
73.9
29.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
83.6
0.76
0.7
77.5
31.2
Minor 5ss
30
-2.3
3.2
39
39.9
Minor BPS
49.4
-0
1.8
64.83
41.6

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007532
30386693 - 30434585
47893
ENSAPLT00000046712
30297864 - 30434599
136736
ENSAPLT00000025709
30385642 - 30434599
48958
ENSAPLT00000024723
30399217 - 30434599
35383
ENSAPLT00000020393
30279313 - 30434599
155287