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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30429107_30429809_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30429107 - 30429809
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATCCTGGAGT
Flanking Amino Acid:
GVSNQFLINTNSELALMYND
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
65.4
0.35
1
58.7
43
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
55.3
0.25
1.9
72.59
44.3

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025709
30385642 - 30434599
48958
ENSAPLT00000024723
30399217 - 30434599
35383
ENSAPLT00000020393
30279313 - 30434599
155287
ENSAPLT00000007532
30386693 - 30434585
47893
ENSAPLT00000046712
30297864 - 30434599
136736