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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30429965_30430055_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30429965 - 30430055
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGACCT
5'SS Class:
major
3'SS Sequence:
CTCTTCCATAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTTCCATAAAG
Flanking Amino Acid:
QTLRKMVIDMVLATDMSKHM
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
63.5
40.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
66.9
0.38
1.1
67.4
31.9
Minor 5ss
40.8
-1
3.1
54.9
43.3
Minor BPS
62.6
0.26
1.8
69.83
43

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025709
30385642 - 30434599
48958
ENSAPLT00000024723
30399217 - 30434599
35383
ENSAPLT00000020393
30279313 - 30434599
155287
ENSAPLT00000046712
30297864 - 30434599
136736
ENSAPLT00000007532
30386693 - 30434585
47893