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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30430179_30431247_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30430179 - 30431247
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
AATATAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATTAATA
Flanking Amino Acid:
LLDNYTDRIQVLRNMVHCAD
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
68.8
0.42
1
60.4
44
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
57.3
0.23
2
72.1
40.4

Associated Gene:

Gene:
PDE4B
Ensembl Gene ID:
ENSAPLG00000007240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020393
30279313 - 30434599
155287
ENSAPLT00000007532
30386693 - 30434585
47893
ENSAPLT00000046712
30297864 - 30434599
136736
ENSAPLT00000025709
30385642 - 30434599
48958
ENSAPLT00000024723
30399217 - 30434599
35383