About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3044393_3045619_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3044393 - 3045619
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTCTGGAAAG
Flanking Amino Acid:
GRRPPVLDSENALEDVSWRL
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.4
41.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.9
0.76
0.8
79.1
32.9
Minor 5ss
49.1
-0.1
2.5
65.5
45.8
Minor BPS
48.6
-0.2
2.2
65.38
42.4

Associated Gene:

Gene:
FRRS1
Ensembl Gene ID:
ENSAPLG00000013379
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020540
3039710 - 3052501
12792
ENSAPLT00000018049
3039710 - 3057568
17859
ENSAPLT00000013940
3039710 - 3056222
16513