Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30456983_30457740_F

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

30456983 - 30457740

Intron Length:

758

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCTATATCC

5'SS Class:

major

3'SS Sequence:

GCACCCACCAGAG|G

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TCCTTAG

U12 Branch Point Sequence:

GCTTCCTTAGCT

Flanking Amino Acid:

EGYSIRPEEPGKHFYSSSES

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.39

1.4

59.3

43.9

Major BPS

54.9

0.12

1.6

53.6

43.8

Major PPT

44.9

-0.2

1.6

42.7

31.6

Minor 5ss

25.3

-2.8

3.7

35.2

40.8

Minor BPS

73.8

0.83

1.6

84.91

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021413

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028156

30452958 - 30463814

10857