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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30493643_30494652_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30493643 - 30494652
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
CATGGTTTATCT
Flanking Amino Acid:
SSTTTAILNSRDSSESHTGP
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
86.9
0.83
0.8
80.5
37
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
46.6
-0.1
2.1
64.09
46.6

Associated Gene:

Gene:
WDR78
Ensembl Gene ID:
ENSAPLG00000008177
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035836
30487493 - 30506872
19380
ENSAPLT00000008498
30489290 - 30506539
17250
ENSAPLT00000042115
30487624 - 30506872
19249