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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3049417_3049646_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3049417 - 3049646
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTGT
5'SS Class:
major
3'SS Sequence:
ATTATTGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTG
Flanking Amino Acid:
TEFKPGDTIEVHLSGPDFEG
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65
41.4
Major BPS
100
1.24
0.5
100
0
Major PPT
76.7
0.6
1
70.2
40.6
Minor 5ss
44.6
-0.6
3.1
65.1
46.2
Minor BPS
61.4
0.22
1.9
72.56
40.4

Associated Gene:

Gene:
FRRS1
Ensembl Gene ID:
ENSAPLG00000013379
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020540
3039710 - 3052501
12792
ENSAPLT00000018049
3039710 - 3057568
17859
ENSAPLT00000013940
3039710 - 3056222
16513