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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3049843_3052312_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3049843 - 3052312
Intron Length:
2470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGGTATTTAATT
Flanking Amino Acid:
CRILTVGGQKMELPSLASGF
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.3
0.73
0.9
81.5
35
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
66.1
0.58
1.5
77.43
39.4

Associated Gene:

Gene:
FRRS1
Ensembl Gene ID:
ENSAPLG00000013379
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020540
3039710 - 3052501
12792