Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3049843_3056070_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3049843 - 3056070

Intron Length:

6228

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGAAC

5'SS Class:

strong_major

3'SS Sequence:

TTACTTTATTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TGGTATTTAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

75.4

34.2

Major BPS

90.7

1.01

0.7

19.9

Major PPT

82.3

0.73

0.9

81.5

Minor 5ss

31.9

-2.1

3.2

42.1

Minor BPS

66.1

0.58

1.5

77.43

39.4

Associated Gene:

Gene:

FRRS1

Ensembl Gene ID:

ENSAPLG00000013379

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013940

3039710 - 3056222

16513