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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3049843_3056774_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3049843 - 3056774
Intron Length:
6932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACGCA
5'SS Class:
major
3'SS Sequence:
TTACTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGGTATTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.4
36.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.3
0.73
0.9
81.5
35
Minor 5ss
36
-1.6
3.4
47.9
47.8
Minor BPS
66.1
0.58
1.5
77.43
39.4

Associated Gene:

Gene:
FRRS1
Ensembl Gene ID:
ENSAPLG00000013379
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018049
3039710 - 3057568
17859