Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30499642_30500133_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30499642 - 30500133

Intron Length:

492

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACATTT

5'SS Class:

strong_major

3'SS Sequence:

TATCTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

TTTTCCAATATT

Flanking Amino Acid:

DQTASVTSARGNITSVTTLE

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

1.1

81.6

33.2

Major BPS

75.9

0.64

66.1

40.5

Major PPT

83.7

0.76

0.9

80.8

36.5

Minor 5ss

49.4

-0

2.9

73.9

42.6

Minor BPS

50.6

0.1

2.2

80.98

40.8

Associated Gene:

Gene:

WDR78

Ensembl Gene ID:

ENSAPLG00000008177

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042115

30487624 - 30506872

19249

ENSAPLT00000035836

30487493 - 30506872

19380

ENSAPLT00000008498

30489290 - 30506539

17250