Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30503252_30503477_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30503252 - 30503477

Intron Length:

226

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAAGAAC

5'SS Class:

major

3'SS Sequence:

CATAATTTGTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATAAT

U12 Branch Point Sequence:

CCTCACATAATT

Flanking Amino Acid:

SQGDPAVSLSDVQVRPEEIK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

68.1

36.6

Major BPS

66.4

0.41

1.1

66.3

36.5

Major PPT

67.5

0.39

1.1

65.5

44.7

Minor 5ss

32.1

-2

3.2

39.2

40.9

Minor BPS

49.3

0.03

1.8

67.27

43.5

Associated Gene:

Gene:

WDR78

Ensembl Gene ID:

ENSAPLG00000008177

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042115

30487624 - 30506872

19249

ENSAPLT00000035836

30487493 - 30506872

19380

ENSAPLT00000008498

30489290 - 30506539

17250