About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30503591_30506382_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30503591 - 30506382
Intron Length:
2792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAAAC
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTCTGCTTATTT
Flanking Amino Acid:
KGLPWRSTLCGRTCGNSSIS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
71.2
34.5
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
87.9
0.85
0.8
83.2
32
Minor 5ss
27.9
-2.5
2.8
26.6
36.4
Minor BPS
58.9
0.36
2
79.24
43.6

Associated Gene:

Gene:
WDR78
Ensembl Gene ID:
ENSAPLG00000008177
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008498
30489290 - 30506539
17250