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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30515831_30519543_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30515831 - 30519543
Intron Length:
3713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAAGAGA
5'SS Class:
major
3'SS Sequence:
TTTTAGCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTTTTTAGCC
Flanking Amino Acid:
APPAAPSQPSVESSSPGGSA
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1
60.8
39.4
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
81.8
0.72
0.9
78.2
36
Minor 5ss
25.7
-2.8
3
27.6
38.5
Minor BPS
71.8
0.66
1.5
81.59
32.8

Associated Gene:

Gene:
MIER1
Ensembl Gene ID:
ENSAPLG00000008492
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026816
30515779 - 30540693
24915