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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30519562_30521053_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30519562 - 30521053
Intron Length:
1492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AATTCTTTAAAA
Flanking Amino Acid:
LRPSVESSSPGGSATSDDHE
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
82.6
0.73
0.9
82.4
34
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
73.1
0.72
1.3
76.53
33.6

Associated Gene:

Gene:
MIER1
Ensembl Gene ID:
ENSAPLG00000008492
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027770
30515490 - 30540693
25204
ENSAPLT00000026816
30515779 - 30540693
24915
ENSAPLT00000008837
30515201 - 30541420
26220