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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30528939_30530769_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30528939 - 30530769
Intron Length:
1831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
AAATTTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTAAAT
U12 Branch Point Sequence:
TTCTCTGTGAGT
Flanking Amino Acid:
RPRRCKYFDTNSEIEEESEE
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
77.1
0.61
0.9
70.5
40
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
48.9
-0
2.3
74.17
43.6

Associated Gene:

Gene:
MIER1
Ensembl Gene ID:
ENSAPLG00000008492
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027770
30515490 - 30540693
25204
ENSAPLT00000026816
30515779 - 30540693
24915
ENSAPLT00000008837
30515201 - 30541420
26220