Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30530835_30531160_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30530835 - 30531160

Intron Length:

326

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATATG

5'SS Class:

strong_major

3'SS Sequence:

TATTTCTAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAA

U12 Branch Point Sequence:

TATTTCTAAACA

Flanking Amino Acid:

DYIPSEDWKKEIMVGSMFQA

Intron Amino Acid Position:

191

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

84.2

33.9

Major BPS

64.6

0.36

1.3

64.8

42.4

Major PPT

74.4

0.55

70.8

38.6

Minor 5ss

38.7

-1.3

2.9

50.6

45.9

Minor BPS

71.2

0.66

1.6

80.05

35.9

Associated Gene:

Gene:

MIER1

Ensembl Gene ID:

ENSAPLG00000008492

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026816

30515779 - 30540693

24915

ENSAPLT00000008837

30515201 - 30541420

26220

ENSAPLT00000027770

30515490 - 30540693

25204