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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30531234_30534024_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30531234 - 30534024
Intron Length:
2791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
CTGGTTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTTAT
U12 Branch Point Sequence:
TTCTGGTTATTT
Flanking Amino Acid:
GICKYKENEKVYENDDQLLW
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
66.2
0.4
1.3
57.4
49.1
Major PPT
77
0.61
0.9
73.8
40.5
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
45.7
-0.2
2.5
70.91
46.7

Associated Gene:

Gene:
MIER1
Ensembl Gene ID:
ENSAPLG00000008492
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027770
30515490 - 30540693
25204
ENSAPLT00000026816
30515779 - 30540693
24915
ENSAPLT00000008837
30515201 - 30541420
26220