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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30534177_30534760_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30534177 - 30534760
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATAAC
5'SS Class:
major
3'SS Sequence:
TCCATCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AGGATCTTAAAT
Flanking Amino Acid:
EGSHIKDNEQALYELVKCNF
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
76.4
32.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
74.6
0.55
0.8
68
32.1
Minor 5ss
41.5
-0.9
2.7
53.5
43.9
Minor BPS
59
0.36
1.5
69.13
41.2

Associated Gene:

Gene:
MIER1
Ensembl Gene ID:
ENSAPLG00000008492
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026816
30515779 - 30540693
24915
ENSAPLT00000008837
30515201 - 30541420
26220
ENSAPLT00000027770
30515490 - 30540693
25204