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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30539489_30540906_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30539489 - 30540906
Intron Length:
1418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
GATCTATTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTGATC
Flanking Amino Acid:
KTPHTDLDTNGISLIIYISP
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.7
37.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78
0.63
0.9
73.9
40.3
Minor 5ss
39.4
-1.2
2.8
43.7
43.9
Minor BPS
67.2
0.52
1.6
75.94
34

Associated Gene:

Gene:
MIER1
Ensembl Gene ID:
ENSAPLG00000008492
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008837
30515201 - 30541420
26220