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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30569439_30569796_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30569439 - 30569796
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCCTATTT
Flanking Amino Acid:
AVCLLMHFTAEACSKGNVAA
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.8
0.81
0.9
80.9
36.4
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
65.9
0.58
1.9
88.76
36.3

Associated Gene:

Gene:
IL12RB2
Ensembl Gene ID:
ENSAPLG00000008716
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032966
30568532 - 30585173
16642
ENSAPLT00000009078
30568532 - 30585173
16642