About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30579364_30580229_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
30579364 - 30580229

Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GGG|GTAAGGGGC

5'SS Class:
major

3'SS Sequence:
TCTTCCATGTAAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTCCAT

U12 Branch Point Sequence:
CTTTCTTCCATG

Flanking Amino Acid:
AVIITDLGIGDLPPPQKVSA

Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.3
0.67
1.1
65.4
40.4

Major BPS
65
0.37
1.3
76.1
38

Major PPT
63.1
0.3
1.1
68.7
36.2

Minor 5ss
29.1
-2.4
3.5
32.5
42.6

Minor BPS
48.3
-0.2
2
58.73
44

Associated Gene:

Gene:
IL12RB2

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

30568532 - 30585173
16642

30568532 - 30585173
16642