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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30581525_30581606_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30581525 - 30581606
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCAGCTTTAAAA
Flanking Amino Acid:
ASVRGYSREKAPSAGPQMYT
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
69.5
41.5
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
81.5
0.71
0.8
77.2
37.1
Minor 5ss
33.9
-1.8
3
44.7
43.1
Minor BPS
60
0.31
1.5
65
41.6

Associated Gene:

Gene:
IL12RB2
Ensembl Gene ID:
ENSAPLG00000008716
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009078
30568532 - 30585173
16642
ENSAPLT00000032966
30568532 - 30585173
16642