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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30590922_30591933_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30590922 - 30591933
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGAT
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AATAAAATAACT
Flanking Amino Acid:
EFDVIHTPNQSSASAPDVDD
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.5
37.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
85.9
0.81
0.8
77.4
36.9
Minor 5ss
29.3
-2.4
3.3
40.4
45.9
Minor BPS
46.6
-0.1
2
68.62
40.8

Associated Gene:

Gene:
SERBP1
Ensembl Gene ID:
ENSAPLG00000023710
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027113
30590865 - 30611254
20390
ENSAPLT00000019768
30590865 - 30611254
20390
ENSAPLT00000033907
30590752 - 30605694
14943
ENSAPLT00000028955
30590865 - 30611254
20390