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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30591973_30592973_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30591973 - 30592973
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTTCTGCTGACG
Flanking Amino Acid:
RASRGGRTDKLVKEFDVIHT
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.2
39.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
85.2
0.79
0.7
76.8
31.9
Minor 5ss
29.2
-2.4
2.9
36.2
40.8
Minor BPS
45
-0.5
2.4
60.45
41.5

Associated Gene:

Gene:
SERBP1
Ensembl Gene ID:
ENSAPLG00000023710
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028955
30590865 - 30611254
20390
ENSAPLT00000027113
30590865 - 30611254
20390
ENSAPLT00000019768
30590865 - 30611254
20390
ENSAPLT00000033907
30590752 - 30605694
14943