About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30593148_30595063_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30593148 - 30595063
Intron Length:
1916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGATC
5'SS Class:
major
3'SS Sequence:
CCCCTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTGCTCTCACTC
Flanking Amino Acid:
MQGSQLESNEAHAEDSVMDH
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
69.9
40.6
Major BPS
72.7
0.56
1
75
30.1
Major PPT
74.2
0.55
0.9
67.7
32.3
Minor 5ss
35.8
-1.6
3.4
51.8
45
Minor BPS
47.7
-0.1
1.8
59.29
40.3

Associated Gene:

Gene:
SERBP1
Ensembl Gene ID:
ENSAPLG00000023710
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027113
30590865 - 30611254
20390