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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30593148_30598102_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30593148 - 30598102
Intron Length:
4955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
CCCCTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTGCTCTCACTC
Flanking Amino Acid:
FVLHKSKSEEAHAEDSVMDH
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
74.2
0.55
0.9
67.7
32.3
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
47.7
-0.1
1.8
59.29
40.3

Associated Gene:

Gene:
SERBP1
Ensembl Gene ID:
ENSAPLG00000023710
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033907
30590752 - 30605694
14943
ENSAPLT00000028955
30590865 - 30611254
20390
ENSAPLT00000019768
30590865 - 30611254
20390