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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30601042_30601175_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30601042 - 30601175
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
ATTCACATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCACATTCACA
Flanking Amino Acid:
EFDRHSGSDRSGLKHEDKRG
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
74.5
41.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.7
0.58
0.9
71.2
38.6
Minor 5ss
41.7
-0.9
3.1
60
38.8
Minor BPS
51.8
0.05
2.1
69.25
42.8

Associated Gene:

Gene:
SERBP1
Ensembl Gene ID:
ENSAPLG00000023710
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027113
30590865 - 30611254
20390
ENSAPLT00000019768
30590865 - 30611254
20390
ENSAPLT00000033907
30590752 - 30605694
14943