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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30601314_30602328_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30601314 - 30602328
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCCAT
U12 Branch Point Sequence:
TGGTGGTGAAGT
Flanking Amino Acid:
KGEGGEFSVDKPILDRPMRG
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
59.5
0.24
1.5
72.5
43.5
Major PPT
70.7
0.47
0.9
63.1
38.7
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
40.6
-0.6
2.6
61.1
48.2

Associated Gene:

Gene:
SERBP1
Ensembl Gene ID:
ENSAPLG00000023710
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028955
30590865 - 30611254
20390
ENSAPLT00000027113
30590865 - 30611254
20390
ENSAPLT00000019768
30590865 - 30611254
20390
ENSAPLT00000033907
30590752 - 30605694
14943